@misc{silsbe_toward_autonomous_2015, 
author={Silsbe, G.M.,Oxborough, K.,Suggett, D.J.,Forster, R.M.,Ihnken, S.,Komarek, O.,Lawrenz, E.,Prasil, O.,Roettgers, R.,Sicner, M.,Simis, S.G.H.,Dijk, M.A.van,Kromkamp, J.C.},
title={Toward autonomous measurements of photosynthetic electron transport rates: An evaluation of active fluorescence-based measurements of photochemistry},
year={2015},
howpublished = {journal article},
doi = {https://doi.org/10.1002/lom3.10014},
abstract = {This study presents a methods evaluation and intercalibration of active fluorescence-based measurements of the quantum yield ( inline image) and absorption coefficient ( inline image) of photosystem II (PSII) photochemistry. Measurements of inline image, inline image, and irradiance (E) can be scaled to derive photosynthetic electron transport rates ( inline image), the process that fuels phytoplankton carbon fixation and growth. Bio-optical estimates of inline image and inline image were evaluated using 10 phytoplankton cultures across different pigment groups with varying bio-optical absorption characteristics on six different fast-repetition rate fluorometers that span two different manufacturers and four different models. Culture measurements of inline image and the effective absorption cross section of PSII photochemistry ( inline image, a constituent of inline image) showed a high degree of correspondence across instruments, although some instrument-specific biases are identified. A range of approaches have been used in the literature to estimate inline image and are evaluated here. With the exception of ex situ inline image estimates from paired inline image and PSII reaction center concentration ( inline image) measurements, the accuracy and precision of in situ inline image methodologies are largely determined by the variance of method-specific coefficients. The accuracy and precision of these coefficients are evaluated, compared to literature data, and discussed within a framework of autonomous inline image measurements. This study supports the application of an instrument-specific calibration coefficient ( inline image) that scales minimum fluorescence in the dark ( inline image) to inline image as both the most accurate in situ measurement of inline image, and the methodology best suited for highly resolved autonomous inline image measurements.© 2014 Association for the Sciences of Limnology and Oceanography},
note = {Online available at: \url{https://doi.org/10.1002/lom3.10014} (DOI). Silsbe, G.; Oxborough, K.; Suggett, D.; Forster, R.; Ihnken, S.; Komarek, O.; Lawrenz, E.; Prasil, O.; Roettgers, R.; Sicner, M.; Simis, S.; Dijk, M.; Kromkamp, J.: Toward autonomous measurements of photosynthetic electron transport rates: An evaluation of active fluorescence-based measurements of photochemistry. Limnology and Oceanography: Methods. 2015. vol. 13, no. 3, 138-155. DOI: 10.1002/lom3.10014}}